2YRS

Human hemoglobin D Los Angeles: crystal structure

Structural Biology Knowledgebase: 2YRS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.160

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2YRS

Classification: TRANSPORT PROTEIN OXYGEN BINDING

Total Structure Weight: 129091.43

Macromolecule Entities
Molecule Chains Length Organism Details
Hemoglobin subunit alpha A, C, I, M 141 Homo sapiens Gene Name(s): HBA1 Gene View HBA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hemoglobin subunit beta B, D, K, O 146 Homo sapiens Mutation: E122Q
Gene Name(s): HBB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D, I, K, M, O PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.160
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.70 α = 90.00
b = 62.76 β = 90.05
c = 110.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-03
  • Released Date: 2008-03-11
  • Deposition author(s): Poy, C.D., Moreno, F., Bonini-Domingos, C.R., Filgueira de Azevedo Jr., W., Bonilla-Rodriguez, G.O.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4