Download MendeleyInhibitor for the Main Protease of Coronavirus Hku4
Ma, Q., Xiao, Y., Hilgenfeld, R.To be published.
2YNA
Crystal structure of the main protease of coronavirus HKU4
- PDB DOI: https://doi.org/10.2210/pdb2YNA/pdb
- Classification: HYDROLASE
- Organism(s): Tylonycteris bat coronavirus HKU4
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-10-13 Released: 2013-10-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.175
- R-Value Work: 0.157
- R-Value Observed: 0.158
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3C-LIKE PROTEINASE | 306 | Tylonycteris bat coronavirus HKU4 | Mutation(s): 0 EC: 3.4.22.69 (PDB Primary Data), 3.4.22 (PDB Primary Data) |  | |
UniProt | |||||
Find proteins for P0C6T4 (Bat coronavirus HKU4) Explore P0C6T4 Go to UniProtKB: P0C6T4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0C6T4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | E [auth A], G [auth B], H [auth B], I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| IMD Query on IMD | D [auth A] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O |  | ||
| NI Query on NI | C [auth A], F [auth B] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.175
- R-Value Work: 0.157
- R-Value Observed: 0.158
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.624 | α = 90 |
| b = 79.624 | β = 90 |
| c = 178.37 | γ = 120 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| autoPROC | data reduction |
| XDS | data reduction |
| autoPROC | data scaling |
| XDS | data scaling |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2013-10-23 Deposition Author(s): Ma, Q., Xiao, Y., Hilgenfeld, R.
Revision History (Full details and data files)
- Version 1.0: 2013-10-23
Type: Initial release - Version 1.1: 2019-05-15
Changes: Data collection, Experimental preparation, Other - Version 1.2: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
