2YHC

STRUCTURE OF BAMD FROM E. COLI

Structural Biology Knowledgebase: 2YHC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2YHC

Classification: MEMBRANE PROTEIN

Total Structure Weight: 26020.25

Macromolecule Entities
Molecule Chains Length Organism Details
UPF0169 LIPOPROTEIN YFIO A 225 Escherichia coli Fragment: RESIDUES 29-245
Mutation: H119Q
Gene Name(s): bamD yfiO b2595 JW2577

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Omp85-TpsB Outer Membrane Transporter Superfamily

Protein Name: BamCD complex of the Bam β-barrel assembly machine


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
URE
Query on URE

A UREA
C H4 N2 O
XSQUKJJJFZCRTK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.198
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.11 α = 90.00
b = 33.43 β = 111.41
c = 57.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-28
  • Released Date: 2011-06-01
  • Deposition author(s): Zeth, K., Albrecht, R.

Revision History

  • 2011-08-10
    Type: Version format compliance | Details: REMARK 4
  • 2011-08-10
    Type: Citation | Details: JRNL