2YCY

TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND ANTAGONIST CYANOPINDOLOL

Structural Biology Knowledgebase: 2YCY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.254

Literature

Macromolecules
Sequence Display for 2YCY

Classification: RECEPTOR

Total Structure Weight: 73645.61

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-1 ADRENERGIC RECEPTOR A, B 313 Meleagris gallopavo Fragment: RESIDUES 33-243,272-276,279-367
Mutation: R68S, M90V, C116L, Y227A, ΔC244, ΔE245, ΔG246, ΔR247, ΔF248, ΔY249, ΔG250, ΔS251, ΔQ252, ΔE253, ΔQ254, ΔP255, ΔQ256, ΔP257, ΔP258, ΔP259, ΔL260, ΔP261, ΔQ262, ΔH263, ΔQ264, ΔP265, ΔI266, ΔL267, ΔG268, ΔN269, ΔG270, ΔR271, ΔT277, ΔS278, A282L, F327A, F338M, C358A
Details: RESIDUES 3-32 AT THE N-TERMINUS AND RESIDUES 244-271 AND 277-278 OF THE THIRD INTRACELLULAR LOOP WERE DELETED FROM THE CONSTRUCT. THE CONSTRUCT WAS TRUNCATED AFTER RESIDUE 367 AND A HEXAHIS TAG ADDED.
Gene Name(s): ADRB1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: β1 adrenergic receptor (engineered)


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SOG
Query on SOG

A, B 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO- PYRAN-3,4,5-TRIOL
1-S-OCTYL-BETA-D-THIOGLUCOSIDE (Synonym)
C14 H28 O5 S
CGVLVOOFCGWBCS-RGDJUOJXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
P32
Query on P32

A, B 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}- 3H-indole-2-carbonitrile
C16 H21 N3 O2
CQEFAUFOQSCRMZ-LBPRGKRZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.254
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 184.76 α = 90.00
b = 56.16 β = 111.27
c = 89.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-17
  • Released Date: 2011-06-08
  • Deposition author(s): Moukhametzianov, R., Warne, T., Edwards, P.C., Serrano-Vega, M.J., Leslie, A.G.W., Tate, C.G., Schertler, G.F.X.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4