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THE 2.1A CRYSTAL STRUCTURE OF S. AUREUS GYRASE COMPLEX WITH GSK299423 AND DNA
DOI:10.2210/pdb2xcs/pdb   NDB ID: NA0645
2XCS
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Isomerase
    Structure Weight: 169100.80
    Molecule: DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A
    Polymer: 1 Type: protein Length: 692
    Chains: B, D
    EC#: 5.99.1.3   
    Fragment: GYRB- C-TERMINAL 27KDA DOMAIN, RESIDUES 410-543 AND 580-644, GYRA- N-TERMINAL 56KDA DOMAIN, RESIDUES 2-491
    Mutation: YES
    Details: C-TERMINUS GYRB (644) FUSED TO N-TERMINUS GYRA (1002). GREEK KEY DOMAIN (544-579) DELETED AND REPLACED WITH TWO RESIDUES, TG
    Organism: Staphylococcus aureus subsp. aureus N315
    Gene Name: gyrA
    UniProtKB: Protein Feature View | Search PDB | P20831  
    Molecule: 5'-5UA*D(GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP *CP*TP*AP*CP*GP*GP*CP*T)-3'
    Polymer: 2 Type: dna Length: 20
    Chains: E, F
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Staphylococcus aureus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2XCO  THE 3.1A CRYSTAL STRUCTURE OF THE CATALYTIC CORE (B'A' REGION) OF STAPHYLOCOCCUS AUREUS DNA GYRASE 
    2XCQ  THE 2.98A CRYSTAL STRUCTURE OF THE CATALYTIC CORE (B'A' REGION) OF STAPHYLOCOCCUS AUREUS DNA GYRASE 
    2XCR  THE 3.5A CRYSTAL STRUCTURE OF THE CATALYTIC CORE (B'A' REGION) OF STAPHYLOCOCCUS AUREUS DNA GYRASE COMPLEXED WITH GSK299423 AND DNA 
    2XCT  THE TWINNED 3.35A STRUCTURE OF S. AUREUS GYRASE COMPLEX WITH CIPROFLOXACIN AND DNA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MN
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    MN Mn
    MANGANESE (II) ION
    RXV
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    RXV C25 H27 N5 O2 S
    6-METHOXY-4-(2-{4-[([1,3]OXATHIOLO[5,4-C]PYRIDIN- 6-YLMETHYL)AMINO]PIPERIDIN-1-YL}ETHYL)QUINOLINE- 3-CARBONITRILE
    RXV:2XCS
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5UA
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    5UA C11 H13 N5 O5 dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA0645
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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