2WWB

CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME

Structural Biology Knowledgebase: 2WWB SBKB.org


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.48 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2WWB

Classification: RIBOSOME

Total Structure Weight: 258759.72


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1 A 476 Canis lupus Gene Name(s): SEC61A1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA B 68 Canis lupus Gene Name(s): SEC61G Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA C 96 Canis lupus Gene Name(s): SEC61B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L4-B H 362 Triticum aestivum Gene Name(s): RPL4B RPL2B YDR012W YD8119.17
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L17-A I 184 Triticum aestivum Gene Name(s): RPL17A RPL17 Gene View RPL20A YKL180W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L19 J 189 Triticum aestivum
60S RIBOSOMAL PROTEIN L25 K 142 Triticum aestivum Gene Name(s): RPL25 YOL127W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L26-A L 127 Triticum aestivum Gene Name(s): RPL26A RPL26 Gene View RPL33A YLR344W L8300.4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L31-A M 113 Triticum aestivum Gene Name(s): RPL31A RPL34 Gene View RPL34A YDL075W D2478
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L35 N 120 Triticum aestivum Gene Name(s): RPL35A Gene View SOS1 Gene View YDL191W D1249
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN L39 O 51 Triticum aestivum Gene Name(s): RPL39 Gene View RPL46 SPB2 YJL189W J0360
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5.8S RRNA D 63 Triticum aestivum H5_H6_H7 FRAGMENT
25S RRNA E 34 Triticum aestivum H24 FRAGMENT
25S RRNA F 25 Triticum aestivum H50 FRAGMENT
25S RRNA G 14 Triticum aestivum H59 FRAGMENT


Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.48 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-10-22
  • Released Date: 2009-12-08
  • Deposition author(s): Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.

Revision History

  • 2011-07-20
    Type: Source and taxonomy | Details: SOURCE
  • 2011-07-20
    Type: Entry title | Details: TITLE
  • 2011-07-20
    Type: Other | Details: REMARK 245, REMARK 300, REMARK 4, REMARK 247, MASTER, REMARK 900
  • 2011-07-20
    Type: Polymer description | Details: COMPND
  • 2011-07-20
    Type: Refinement description | Details: REMARK 3
  • 2011-07-20
    Type: Biological assembly | Details: REMARK 350
  • 2011-07-20
    Type: Citation | Details: JRNL
  • 2011-07-20
    Type: Entry authorship | Details: AUTHOR