2VWJ

Uracil Recognition in Archaeal DNA Polymerases Captured by X-ray Crystallography.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.78 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 2VWJ

Classification: DNA REPLICATION

Total Structure Weight: 98058.73


Macromolecule Entities
Molecule Chains Length Organism Details
DNA POLYMERASE A 773 Thermococcus gorgonarius EC#: 2.7.7.7 IUBMB
Mutation: E151K, K174R, D215A
Gene Name(s): pol polA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*AP*UP*GP*GP*AP*GP*AP*CP*GP *GP*CP*TP*TP*TP*TP*GP*CP*CP*GP*TP*GP*TP*C)-3' B 26 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.78 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.227
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 100.70 α = 90.00
b = 161.91 β = 90.00
c = 221.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-25
  • Released Date: 2008-07-22
  • Deposition author(s): Firbank, S.J., Wardle, J., Heslop, P., Lewis, R.J., Connolly, B.A.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance