2VT4

TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND CYANOPINDOLOL

Structural Biology Knowledgebase: 2VT4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 2VT4

Classification: RECEPTOR

Total Structure Weight: 148238.63

Macromolecule Entities
Molecule Chains Length Organism Details
BETA1 ADRENERGIC RECEPTOR A, B, C, D 313 Meleagris gallopavo Fragment: RESIDUES 33-243,272-276,279-367
Mutation: R68S, M90V, C116L, Y227A, A282L, F327A, F338M, C358A
Gene Name(s): ADRB1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: β1 adrenergic receptor (engineered)


Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SOG
Query on SOG

A, B, C, D 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO- PYRAN-3,4,5-TRIOL
1-S-OCTYL-BETA-D-THIOGLUCOSIDE (Synonym)
C14 H28 O5 S
CGVLVOOFCGWBCS-RGDJUOJXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
P32
Query on P32

A, B, C, D 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}- 3H-indole-2-carbonitrile
C16 H21 N3 O2
CQEFAUFOQSCRMZ-LBPRGKRZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
D10
Query on D10

A, C DECANE
C10 H22
DIOQZVSQGTUSAI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.212
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 55.50 α = 67.60
b = 86.80 β = 73.30
c = 95.50 γ = 85.80

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-05-09
  • Released Date: 2008-06-24
  • Deposition author(s): Warne, A., Serrano-Vega, M.J., Baker, J.G., Moukhametzianov, R., Edwards, P.C., Henderson, R., Leslie, A.G.W., Tate, C.G., Schertler, G.F.X.

Revision History

  • 2013-01-30
    Type: Other | Details: REMARK 525
  • 2013-01-30
    Type: Version format compliance | Details: REMARK 4
  • 2013-01-30
    Type: Non-polymer description | Details: FORMUL
  • 2013-01-30
    Type: Biological assembly | Details: REMARK 350
  • 2013-01-30
    Type: Geometry validation | Details: REMARK 500
  • 2013-01-30
    Type: Citation | Details: JRNL