2VDB

STRUCTURE OF HUMAN SERUM ALBUMIN WITH S-NAPROXEN AND THE GA MODULE

Structural Biology Knowledgebase: 2VDB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VDB

Classification: PROTEIN BINDING

Total Structure Weight: 73391.16

Macromolecule Entities
Molecule Chains Length Organism Details
SERUM ALBUMIN A 579 Homo sapiens Fragment: RESIDUES 30-608
Gene Name(s): ALB Gene View GIG20 GIG42 PRO0903 PRO1708 PRO2044 PRO2619 PRO2675 UNQ696/PRO1341
PEPTOSTREPTOCOCCAL ALBUMIN-BINDING PROTEIN B 55 Finegoldia magna Fragment: RESIDUES 213-265
Gene Name(s): pab

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NPS
Query on NPS

A (2S)-2-(6-methoxynaphthalen-2-yl)propanoic acid
NAPROXEN (Synonym)
C14 H14 O3
CMWTZPSULFXXJA-VIFPVBQESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DKA
Query on DKA

A DECANOIC ACID
C10 H20 O2
GHVNFZFCNZKVNT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.234
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 190.51 α = 90.00
b = 49.46 β = 93.00
c = 79.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-04
  • Released Date: 2008-02-26
  • Deposition author(s): Lejon, S., Cramer, J.F., Nordberg, P.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor