2VCP

Crystal structure of N-Wasp VC domain in complex with skeletal actin

Structural Biology Knowledgebase: 2VCP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.331
  • R-Value Work: 0.275

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VCP

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 104500.76

Macromolecule Entities
Molecule Chains Length Organism Details
ACTIN, ALPHA SKELETAL MUSCLE A, B 375 Oryctolagus cuniculus Fragment: RESIDUES 3-377
Gene Name(s): ACTA1 Gene View ACTA
NEURAL WISKOTT-ALDRICH SYNDROME PROTEIN D, E 93 Homo sapiens Fragment: WH2 1,2 AND C DOMAIN, RESIDUES 392-484
Gene Name(s): WASL Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, B ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
HIC
Query on HIC
A, B L-PEPTIDE LINKING C7 H11 N3 O2 HIS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.331
  • R-Value Work: 0.275
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 136.24 α = 90.00
b = 136.24 β = 90.00
c = 205.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-09-26
  • Released Date: 2008-11-04
  • Deposition author(s): Gaucher, J.F., Didry, D., Carlier, M.F.

Revision History

  • 2013-01-30
    Type: Citation | Details: JRNL
  • 2012-08-08
    Type: Geometry validation | Details: REMARK 500
  • 2012-08-08
    Type: Refinement description | Details: REMARK 3
  • 2012-08-08
    Type: Source and taxonomy | Details: SOURCE
  • 2012-08-08
    Type: Other | Details: MASTER,REMARK 280
  • 2012-08-08
    Type: Version format compliance | Details: REMARK 4
  • 2012-08-08
    Type: Function and keywords | Details: KEYWDS
  • 2012-08-08
    Type: Citation | Details: JRNL
  • 2012-08-08
    Type: Biological assembly | Details: REMARK 300,REMARK 350