2VCK

STRUCTURE OF PHYCOERYTHROBILIN SYNTHASE PEBS FROM THE CYANOPHAGE P-SSM2 IN COMPLEX WITH THE BOUND SUBSTRATE BILIVERDIN IXA

Structural Biology Knowledgebase: 2VCK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.184

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VCK

Classification: OXIDOREDUCTASE

Total Structure Weight: 112816.22

Macromolecule Entities
Molecule Chains Length Organism Details
CYANOBACTERIAL PHYCOERYTHROBILIN A, B, C, D 233 Prochlorococcus phage p-ssm2 EC#: 1.3.7.6 IUBMB
Gene Name(s): pebS PSSM2_058

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BLA
Query on BLA

A, B, C, D BILIVERDINE IX ALPHA
C33 H34 N4 O6
GWZYPXHJIZCRAJ-SRVCBVSDSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.184
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.56 α = 92.26
b = 67.57 β = 109.07
c = 81.28 γ = 106.58

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-09-25
  • Released Date: 2008-08-05
  • Deposition author(s): Dammeyer, T., Hofmann, E., Frankenberg-Dinkel, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4