2VCD

Solution structure of the FKBP-domain of Legionella pneumophila Mip in complex with rapamycin

• PDB DOI: https://doi.org/10.2210/pdb2VCD/pdb
• BMRB: 15507

• Classification: ISOMERASE
• Organism(s): Legionella pneumophila subsp. pneumophila str. Philadelphia 1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-09-20 Released: 2008-09-02 
• Deposition Author(s): Ceymann, A., Horstmann, M., Ehses, P., Schweimer, K., Paschke, A.-K., Fischer, G., Roesch, P., Faber, C.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 80 
• Conformers Submitted: 16 
• Selection Criteria: LOWEST ENERGY 

Literature

Solution structure of the Legionella pneumophila Mip-rapamycin complex.

Ceymann, A., Horstmann, M., Ehses, P., Schweimer, K., Paschke, A.K., Steinert, M., Faber, C.

(2008) BMC Struct Biol 8: 17-17

• PubMed: 18366641 
• DOI: https://doi.org/10.1186/1472-6807-8-17
• Primary Citation of Related Structures:  
  2VCD


• PubMed Abstract: 
  

  Legionella pneumphila is the causative agent of Legionnaires' disease. A major virulence factor of the pathogen is the homodimeric surface protein Mip. It shows peptidyl-prolyl cis/trans isomerase activty and is a receptor of FK506 and rapamycin, which both inhibit its enzymatic function. Insight into the binding process may be used for the design of novel Mip inhibitors as potential drugs against Legionnaires' disease.

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Organizational Affiliation: 

Department of Experimental Physics 5, University of Würzburg, Würzburg, Germany. [e-mail]

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 15.58 kDa 
• Atom Count: 1,100 
• Modelled Residue Count: 137 
• Deposited Residue Count: 137 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein MIP	A	137	Legionella pneumophila subsp. pneumophila str. Philadelphia 1	Mutation(s): 0  Gene Names: mip, lpg0791 EC: 5.2.1.8
UniProt
Find proteins for Q5ZXE0 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZXE0  Go to UniProtKB:  Q5ZXE0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
RAP	B [auth A]	RAPAMYCIN IMMUNOSUPPRESSANT DRUG C51 H79 N O13 QFJCIRLUMZQUOT-HPLJOQBZSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 80 
• Conformers Submitted: 16 
• Selection Criteria: LOWEST ENERGY 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-09-02 
Deposition Author(s): Ceymann, A., Horstmann, M., Ehses, P., Schweimer, K., Paschke, A.-K., Fischer, G., Roesch, P., Faber, C.

Revision History  

• Version 1.0: 2008-09-02
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-05-09
  Changes: Data collection, Database references, Source and taxonomy, Structure summary