2RGP

Structure of EGFR in complex with hydrazone, a potent dual inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 2RGP

Classification: TRANSFERASE

Total Structure Weight: 36707.27

Macromolecule Entities
Molecule Chains Length Organism Details
Epidermal growth factor receptor A 315 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: Residues 702-1016
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HYZ
Query on HYZ

A N-[1-(3-fluorobenzyl)-1H-indazol-5-yl]-5- [(piperidin-1-ylamino)methyl]pyrimidine-4,6- diamine
C24 H27 F N8
IMHOFYWDXRUQBM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HYZ N/A in BindingDB
IC50: 300 nM  BindingMOAD
IC50: 30 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.228
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.85 α = 90.00
b = 68.03 β = 90.00
c = 103.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-04
  • Released Date: 2008-08-26
  • Deposition author(s): Abad, M.C.

Revision History

  • 2011-07-13
    Type: Version format compliance