2QRV

Structure of Dnmt3a-Dnmt3L C-terminal domain complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.259

Literature

Macromolecules
Sequence Display for 2QRV

Classification: transferase / transferase regulator

Total Structure Weight: 244152.19

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (cytosine-5)-methyltransferase 3A A, D, E, H 295 Homo sapiens EC#: 2.1.1.37 IUBMB
Fragment: residues 623 to 908
Gene Name(s): DNMT3A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA (cytosine-5)-methyltransferase 3-like B, C, F, G 230 Homo sapiens Fragment: residues 160 to 386
Gene Name(s): DNMT3L Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, D, E, H S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SAH IC50: >50000 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.259
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 401.88 α = 90.00
b = 401.88 β = 90.00
c = 49.69 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-29
  • Released Date: 2007-12-04
  • Deposition author(s): Jia, D., Cheng, X.

Revision History

  • 2011-07-13
    Type: Version format compliance