2QMY

Quinone Reductase 2 in complex with adrenochrome

Structural Biology Knowledgebase: 2QMY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2QMY

Classification: OXIDOREDUCTASE

Total Structure Weight: 53759.29

Macromolecule Entities
Molecule Chains Length Organism Details
Ribosyldihydronicotinamide dehydrogenase A, B 230 Homo sapiens EC#: 1.10.5.1 IUBMB
Gene Name(s): NQO2 Gene View NMOR2

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AD1
Query on AD1

A, B (3S)-3-hydroxy-1-methyl-2,3-dihydro-1H-indole- 5,6-dione
C9 H9 N O3
RPHLQSHHTJORHI-SECBINFHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.195
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.83 α = 90.00
b = 106.46 β = 90.00
c = 56.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-17
  • Released Date: 2008-06-24
  • Deposition author(s): Zhang, Z., Fu, Y., Buryanovskky, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4