2PFG

Crystal structure of human CBR1 in complex with BiGF2.

Structural Biology Knowledgebase: 2PFG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.112

Literature

Macromolecules
Sequence Display for 2PFG

Classification: Oxidoreductase

Total Structure Weight: 31517.30

Macromolecule Entities
Molecule Chains Length Organism Details
Carbonyl reductase [NADPH] 1 A 276 Homo sapiens EC#: 1.1.1.184 IUBMB
Gene Name(s): CBR1 Gene View CBR CRN SDR21C1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DDD
Query on DDD

A (5R,10S)-5-{[(CARBOXYMETHYL)AMINO]CARBONYL}- 7-OXO-3-THIA-1,6-DIAZABICYCLO[4.4.1]UNDECANE- 10-CARBOXYLIC ACID
C12 H17 N3 O6 S
FNEMNSFAPZMNDP-YUMQZZPRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
M0H
Query on M0H
A L-PEPTIDE LINKING C4 H9 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.112
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.64 α = 90.00
b = 59.88 β = 90.00
c = 87.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-04-04
  • Released Date: 2007-09-25
  • Deposition author(s): Rauh, D., Bateman, R.L., Shokat, K.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update