2P4Q

Crystal Structure Analysis of Gnd1 in Saccharomyces cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 2P4Q

Classification: OXIDOREDUCTASE

Total Structure Weight: 55001.40

Macromolecule Entities
Molecule Chains Length Organism Details
6-phosphogluconate dehydrogenase, decarboxylating 1 A 497 Saccharomyces cerevisiae EC#: 1.1.1.44 IUBMB
Gene Name(s): GND1 YHR183W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FLC
Query on FLC

A CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.211
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 147.26 α = 90.00
b = 147.26 β = 90.00
c = 114.43 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-12
  • Released Date: 2007-07-24
  • Deposition author(s): He, W., Wang, Y., Liu, W., Zhou, C.Z.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance