2O8B

human MutSalpha (MSH2/MSH6) bound to ADP and a G T mispair

Structural Biology Knowledgebase: 2O8B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.243

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2O8B

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 231020.16


Macromolecule Entities
Molecule Chains Length Organism Details
DNA mismatch repair protein Msh2 A 934 Homo sapiens Gene Name(s): MSH2 Gene View
DNA mismatch repair protein MSH6 B 1022 Homo sapiens Fragment: residues 341-1360
Gene Name(s): MSH6 Gene View GTBP
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*AP*AP*CP*CP*GP*CP*GP*CP*GP*CP*TP*AP*GP*G)-3' E 15 synthetic
5'-D(*CP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*TP*TP*C)-3' F 15 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.243
  • Space Group: P 43 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 258.74 α = 90.00
b = 258.74 β = 90.00
c = 258.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-12
  • Released Date: 2007-06-05
  • Deposition author(s): Warren, J.J., Pohlhaus, T.J., Changela, A., Modrich, P.L., Beese, L.S.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4