2O3H

Crystal structure of the human C65A Ape

Structural Biology Knowledgebase: 2O3H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2O3H

Classification: LYASE

Total Structure Weight: 32548.68

Macromolecule Entities
Molecule Chains Length Organism Details
DNA-(apurinic or apyrimidinic site) lyase A 285 Homo sapiens EC#: 3.1 IUBMB 4.2.99.18 IUBMB
Mutation: C65A
Gene Name(s): APEX1 Gene View APE APE1 APEX APX HAP1 Gene View REF1

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
SM
Query on SM

A SAMARIUM (III) ION
Sm
DOSGOCSVHPUUIA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.177
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.69 α = 90.00
b = 143.60 β = 90.00
c = 45.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-01
  • Released Date: 2007-12-11
  • Deposition author(s): Georgiadis, M.M., Gaur, R.K., Delaplane, S., Svenson, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4