2O14

X-Ray Crystal Structure of Protein YXIM_BACsu from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR595


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 2O14

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 41787.09

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical protein yxiM A 375 Bacillus subtilis Mutation: M25M, M52M, M114M, M190M, M205M, M235M, M258M, M261M, M336M
Gene Name(s): yxiM BSU39120 SS8D
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.189
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 85.43 α = 90.00
b = 59.77 β = 100.34
c = 92.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-28
  • Released Date: 2006-12-12
  • Deposition author(s): Kuzin, A.P., Chen, Y., Seetharaman, J., Chen, C.X., Fang, Y., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Revision History

  • Version 1_0: 2006-12-12

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description