2NN6

Structure of the human RNA exosome composed of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, and Rrp40

  • Classification: HYDROLASE / TRANSFERASE
  • Deposited: 2006-10-23 Released: 2006-12-26
  • Deposition author(s): Lima, C.D.
  • Organism: Homo sapiens
  • Expression System: Escherichia coli, Escherichia coli, Escherichia coli, Escherichia coli, Escherichia coli, Escherichia coli, Escherichia coli, Escherichia coli, Escherichia coli
  • Mutation(s): 1

Structural Biology Knowledgebase: 2NN6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.344
  • R-Value Work: 0.291

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2NN6

Classification: HYDROLASE / TRANSFERASE

Total Structure Weight: 272667.38

Macromolecule Entities
Molecule Chains Length Organism Details
Polymyositis/scleroderma autoantigen 1 A 358 Homo sapiens Gene Name(s): EXOSC9 Gene View PMSCL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Exosome complex exonuclease RRP41 B 249 Homo sapiens EC#: 3.1.13 IUBMB
Gene Name(s): EXOSC4 Gene View RRP41 SKI6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Exosome complex exonuclease RRP43 C 278 Homo sapiens EC#: 3.1.13 IUBMB
Gene Name(s): EXOSC8 Gene View OIP2 RRP43
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Exosome complex exonuclease RRP46 D 237 Homo sapiens EC#: 3.1.13 IUBMB
Gene Name(s): EXOSC5 Gene View CML28 RRP46
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Exosome complex exonuclease RRP42 E 305 Homo sapiens EC#: 3.1.13 IUBMB
Mutation: L274V
Gene Name(s): EXOSC7 Gene View KIAA0116 RRP42
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Exosome component 6 F 272 Homo sapiens Gene Name(s): EXOSC6 Gene View MTR3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Exosome complex exonuclease RRP40 G 289 Homo sapiens EC#: 3.1.13 IUBMB
Gene Name(s): EXOSC3 Gene View RRP40 CGI-102
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Exosome complex exonuclease RRP4 H 308 Homo sapiens EC#: 3.1.13 IUBMB
Gene Name(s): EXOSC2 Gene View RRP4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
3'-5' exoribonuclease CSL4 homolog I 209 Homo sapiens EC#: 3.1.13 IUBMB
Gene Name(s): EXOSC1 Gene View CSL4 CGI-108
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
A L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.344
  • R-Value Work: 0.291
  • Space Group: P 4 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 307.80 α = 90.00
b = 307.80 β = 90.00
c = 307.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-23
  • Released Date: 2006-12-26
  • Deposition author(s): Lima, C.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4