2M3H

Structure of Dido PHD domain

• PDB DOI: https://doi.org/10.2210/pdb2M3H/pdb
• BMRB: 18963

• Classification: APOPTOSIS
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-01-19 Released: 2013-08-07 
• Deposition Author(s): Santiveri, C.M., Perez-Canadillas, J.M., Jimenez, M.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Literature

NMR structure note: PHD domain from death inducer obliterator protein and its interaction with H3K4me3.

Santiveri, C.M., Garcia-Mayoral, M.F., Perez-Canadillas, J.M., Jimenez, M.A.

(2013) J Biomol NMR 56: 183-190

• PubMed: 23579637 
• DOI: https://doi.org/10.1007/s10858-013-9726-x
• Primary Citation of Related Structures:  
  2M3H

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Organizational Affiliation: 

Instituto de Química Física Rocasolano, CSIC, Serrano 119, 28006 Madrid, Spain.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 7.18 kDa 
• Atom Count: 487 
• Modelled Residue Count: 61 
• Deposited Residue Count: 61 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Death-inducer obliterator 1	A	61	Homo sapiens	Mutation(s): 0  Gene Names: DIDO1, C20orf158, DATF1, KIAA0333
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BTC0 (Homo sapiens) Explore Q9BTC0  Go to UniProtKB:  Q9BTC0
PHAROS:  Q9BTC0 GTEx:  ENSG00000101191

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-08-07 
Deposition Author(s): Santiveri, C.M., Perez-Canadillas, J.M., Jimenez, M.

Revision History  

• Version 1.0: 2013-08-07
  Type: Initial release
  
• Version 1.1: 2023-06-14
  Changes: Data collection, Database references, Derived calculations, Other