2JGY

The crystal structure of human orotidine-5'-decarboxylase domain of human uridine monophosphate synthetase (UMPS)

Structural Biology Knowledgebase: 2JGY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.158

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2JGY

Classification: TRANSFERASE

Total Structure Weight: 61262.80

Macromolecule Entities
Molecule Chains Length Organism Details
UMP SYNTHASE A, B 279 Homo sapiens EC#: 4.1.1.23 IUBMB
Fragment: OROTIDINE-5'-DECARBOXYLASE DOMAIN OF UMPS, RESIDUES 224-479
Details: THE FIRST TWO RESIDUES OF CHAIN A (SER222 AND MET223) ARE CLONING ARTIFACTS SINCE THEY BELONG TO THE N-TERMINAL LINKER BETWEEN THE START OF THE DECARBOXYLASE DOMAIN (GLU224) AND THE HEXAHISTIDINE TAIL
Gene Name(s): UMPS Gene View OK/SW-cl.21


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.158
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.83 α = 90.00
b = 77.83 β = 90.00
c = 152.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-16
  • Released Date: 2007-03-06
  • Deposition author(s): Moche, M., Ogg, D., Arrowsmith, C., Berglund, H., Busam, R., Collins, R., Dahlgren, L.G., Edwards, A., Ericsson, U.B., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Hallberg, B.M., Holmberg-Schiavone, L., Johansson, I., Karlberg, T., Kosinska, U., Kotenyova, T., Lehtio, L., Nilsson, M.E., Nyman, T., Persson, C., Sagemark, J., Stenmark, P., Sundstrom, M., Uppenberg, J., Upsten, M., Thorsell, A.G., van den Berg, S., Weigelt, J., Nordlund, P., Structural Genomics Consortium (SGC)

Revision History

No revisions since initial release