2J6A

Crystal structure of S. cerevisiae YNR046w, a zinc finger protein from the eRF1 methyltransferase complex.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 2J6A

Classification: TRANSFERASE

Total Structure Weight: 16034.57

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN TRM112 A 141 Saccharomyces cerevisiae EC#: 2.1.1 IUBMB
Gene Name(s): TRM112 YNR046W N3445
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.198
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 92.60 α = 90.00
b = 38.46 β = 102.24
c = 45.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-27
  • Released Date: 2006-09-28
  • Deposition author(s): Heurgue-Hamard, V., Graille, M., Scrima, N., Ulryck, N., Champ, S., Van Tilbeurgh, H., Buckingham, R.H.

Revision History

  • Version 1_0: 2006-09-28

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance