2J0D

Crystal structure of human P450 3A4 in complex with erythromycin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 2J0D

Classification: OXIDOREDUCTASE

Total Structure Weight: 112929.86

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME P450 3A4 A, B 485 Homo sapiens Fragment: SOLUBLE DOMAIN, RESIDUES 24-502
Mutation: W392V
Gene Name(s): CYP3A4 Gene View CYP3A3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ERY
Query on ERY

A ERYTHROMYCIN A
C37 H67 N O13
ULGZDMOVFRHVEP-RWJQBGPGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ERY IC50: 190 - 33000 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.238
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 67.25 α = 90.00
b = 210.71 β = 90.00
c = 161.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-08-02
  • Released Date: 2006-09-04
  • Deposition author(s): Sjogren, T., Ekroos, M.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance