2HE0

Crystal structure of a human Notch1 ankyrin domain mutant

PDB DOI: https://doi.org/10.2210/pdb2HE0/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2006-06-21 Released: 2006-07-04
Deposition Author(s): Gupta, D., Ehebauer, M.T., Chirgadze, D.Y., Martinez Arias, A., Blundell, T.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.231
R-Value Work: 0.188
R-Value Observed: 0.190

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of a human Notch1 ankyrin domain mutant

Gupta, D., Ehebauer, M.T., Chirgadze, D.Y., Martinez Arias, A., Blundell, T.L.

To be published.

Macromolecule Content

Total Structure Weight: 55.33 kDa
Atom Count: 3,389
Modelled Residue Count: 388
Deposited Residue Count: 506
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Notch1 preproprotein variant	A, B	253	Homo sapiens	Mutation(s): 2 Gene Names: Notch 1
UniProt & NIH Common Fund Data Resources
Find proteins for P46531 (Homo sapiens) Explore P46531 Go to UniProtKB: P46531
PHAROS: P46531 GTEx: ENSG00000148400
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P46531
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.231
R-Value Work: 0.188
R-Value Observed: 0.190
Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.982	α = 90
b = 96.982	β = 90
c = 108.719	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
AMoRE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-07-04

Deposition Author(s):

Chirgadze, D.Y.

Martinez Arias, A.

Revision History (Full details and data files)

Version 1.0: 2006-07-04
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-10-20
Changes: Database references, Derived calculations
Version 1.4: 2023-08-30
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.