2H4F

Sir2-p53 peptide-NAD+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 2H4F

Classification: HYDROLASE

Total Structure Weight: 30438.15

Macromolecule Entities
Molecule Chains Length Organism Details
NAD-dependent deacetylase A 246 Thermotoga maritima EC#: 3.5.1 IUBMB
Gene Name(s): cobB sir2 TM_0490
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Cellular tumor antigen p53 D 18 Homo sapiens Mutation: K11X
Gene Name(s): TP53 Gene View P53
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ALY
Query on ALY
D L-PEPTIDE LINKING C8 H16 N2 O3 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.192
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.82 α = 90.00
b = 59.33 β = 90.00
c = 106.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-24
  • Released Date: 2006-09-05
  • Deposition author(s): Hoff, K.G., Avalos, J.L., Sens, K., Wolberger, C.

Revision History

  • Version 1_0: 2006-09-05

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance