2H2I

The Structural basis of Sirtuin Substrate Affinity

Structural Biology Knowledgebase: 2H2I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2H2I

Classification: Hydrolase

Total Structure Weight: 28059.93

Macromolecule Entities
Molecule Chains Length Organism Details
NAD-dependent deacetylase A 246 Thermotoga maritima EC#: 3.5.1 IUBMB
Gene Name(s): cobB sir2 TM_0490
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZPG
Query on ZPG

A (2S,5R,8R,11S,14S,17S,21R)-5,8,11,14,17-PENTAMETHYL- 4,7,10,13,16,19-HEXAOXADOCOSANE-2,21-DIOL
C21 H44 O8
XGDXHSHOQKNIEW-YSPFXGIPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.186
  • Space Group: P 4 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 133.11 α = 90.00
b = 133.11 β = 90.00
c = 133.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-18
  • Released Date: 2006-12-05
  • Deposition author(s): Cosgrove, M.S., Wolberger, C.

Revision History

  • 2012-06-27
    Type: Entry authorship | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4