2GTK

Structure-based Design of Indole Propionic Acids as Novel PPARag CO-Agonists


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 2GTK

Classification: TRANSCRIPTION REGULATOR

Total Structure Weight: 32591.31

Macromolecule Entities
Molecule Chains Length Organism Details
Peroxisome proliferator-activated receptor gamma A 271 Homo sapiens Gene Name(s): PPARG Gene View NR1C3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Decamer from Nuclear receptor coactivator 1 B 10 Homo sapiens EC#: 2.3.1.48 IUBMB
Fragment: residues 631-640
Details: full protein is transferase, 2.3.1.48
Gene Name(s): NCOA1 Gene View BHLHE74 SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
208
Query on 208

A (2S)-3-(1-{[2-(2-CHLOROPHENYL)-5-METHYL-1,3- OXAZOL-4-YL]METHYL}-1H-INDOL-5-YL)-2-ETHOXYPROPANOIC ACID
C24 H23 Cl N2 O4
PAWOPJKHTZCKMT-QFIPXVFZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
208 N/A in BindingDB
IC50: 251 nM  BindingMOAD
IC50: 251 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.195
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 54.24 α = 90.00
b = 68.32 β = 90.00
c = 87.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-28
  • Released Date: 2006-09-26
  • Deposition author(s): Kuhn, B., Hilpert, H., Benz, J., Binggeli, A., Grether, U., Humm, R., Maerki, H.-P., Meyer, M., Mohr, P.

Revision History

  • Version 1_0: 2006-09-26

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description