2GH5

Crystal Structure of human Glutathione Reductase complexed with a Fluoro-Analogue of the Menadione Derivative M5

Structural Biology Knowledgebase: 2GH5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2GH5

Classification: OXIDOREDUCTASE

Total Structure Weight: 106902.38

Macromolecule Entities
Molecule Chains Length Organism Details
glutathione reductase, mitochondrial A, B 478 Homo sapiens EC#: 1.8.1.7 IUBMB
Fragment: glutathione reductase
Details: alkylation of CYS 58 by ELI is formed by fluoro-ELI, see REMARK 600
Gene Name(s): GSR Gene View GLUR GRD1

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ELI
Query on ELI

A, B 6-(3-METHYL-1,4-DIOXO-1,4-DIHYDRONAPHTHALEN- 2-YL)HEXANOIC ACID
C17 H18 O4
ICGRXHWXPCXIKM-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A, B GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ELI IC50: 500 - 3200 nM (100) BindingDB
Ki: 3700 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.224
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.70 α = 90.00
b = 63.60 β = 101.12
c = 103.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-25
  • Released Date: 2006-09-26
  • Deposition author(s): Fritz-Wolf, K., Winzer, A., Bauer, H., Schirmer, H., Davioud-Charvet, E.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4