2FLI

The crystal structure of D-ribulose 5-phosphate 3-epimerase from Streptococus pyogenes complexed with D-xylitol 5-phosphate

Structural Biology Knowledgebase: 2FLI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2FLI

Classification: ISOMERASE

Total Structure Weight: 288766.34

Macromolecule Entities
Molecule Chains Length Organism Details
ribulose-phosphate 3-epimerase A, B, C..., D, E, F, G, H, I, J, K, LA, B, C, D, E, F, G, H, I, J, K, L 220 Streptococcus pyogenes EC#: 5.1.3 IUBMB
Gene Name(s): rpe SPy_0264

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DX5
Query on DX5

A, B, C, D, E, F, G, H, I, J, K, L D-XYLITOL-5-PHOSPHATE
D-HYLITOL-5-PHOSPHATE (Synonym)
C5 H13 O8 P
VJDOAZKNBQCAGE-VPENINKCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D, E, F, G, H, I, J, K, L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.224
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 80.02 α = 90.00
b = 199.45 β = 109.76
c = 87.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-06
  • Released Date: 2006-03-07
  • Deposition author(s): Fedorov, A.A., Fedorov, E.V., Akana, J., Gerlt, J.A., Almo, S.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4