2FFU

Crystal Structure of Human ppGalNAcT-2 complexed with UDP and EA2

Structural Biology Knowledgebase: 2FFU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 2FFU

Classification: transferase

Total Structure Weight: 58907.92

Macromolecule Entities
Molecule Chains Length Organism Details
Polypeptide N-acetylgalactosaminyltransferase 2 A 501 Homo sapiens EC#: 2.4.1.41 IUBMB
Fragment: Catalytic and lectin domains
Gene Name(s): GALNT2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
13-Peptide EA2, PTTDSTTPAPTTK P 13 Rattus norvegicus Fragment: residues 244-256 of rat submandibular gland mucin
Gene Name(s): Prol1 Muc10 RSM-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UDP
Query on UDP

A URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.178
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.34 α = 90.00
b = 69.34 β = 90.00
c = 169.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-20
  • Released Date: 2006-01-31
  • Deposition author(s): Fritz, T.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4