2F38

Crystal structure of prostaglandin F synathase containing bimatoprost

Structural Biology Knowledgebase: 2F38 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2F38

Classification: OXIDOREDUCTASE

Total Structure Weight: 38055.48

Macromolecule Entities
Molecule Chains Length Organism Details
Aldo-keto reductase family 1 member C3 A 323 Homo sapiens Gene Name(s): AKR1C3 Gene View DDH1 HSD17B5 KIAA0119 PGFS

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
15M
Query on 15M

A (5Z)-7-{(1R,2R,3R,5S)-3,5-DIHYDROXY-2-[(1E,3S)- 3-HYDROXY-5-PHENYLPENT-1-ENYL]CYCLOPENTYL}- N-ETHYLHEPT-5-ENAMIDE
BIMATOPROST (Synonym)
C25 H37 N O4
AQOKCDNYWBIDND-FTOWTWDKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
15M N/A in BindingDB
IC50: 6000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.220
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.27 α = 90.00
b = 78.16 β = 100.20
c = 48.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-18
  • Released Date: 2006-10-31
  • Deposition author(s): Komoto, J., Yamada, T., Watanabe, K., Woodward, D.F., Takusagawa, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4