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Crystal structure of the extracellular domain of Kit in complex with stem cell factor (SCF)
 
 
DOI:10.2210/pdb2e9w/pdb
2E9W
 
Primary Citation
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  •  
    Move Section Molecular Description Hide
    Classification: Transferase/hormone
    Structure Weight: 143236.66
     
    Molecule:Mast/stem cell growth factor receptor
    Polymer:1Type:polypeptide(L)Length:489
    Chains:A, B
    EC#:2.7.10.1 Go to IUBMB EC entry  
    Fragment:EXTRACELLULAR DOMAINS, D1 - D5
    Mutation:N130S, N145S
    Molecule:Kit ligand
    Polymer:2Type:polypeptide(L)Length:141
    Chains:C, D
    Fragment:Soluble form, residues 26 - 166
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens Go to NCBI Taxonomy entry Common Name: Human Expression System: Spodoptera frugiperda  
    Polymer: 2
    Scientific Name: Homo sapiens Go to NCBI Taxonomy entry Common Name: Human Expression System: Escherichia coli  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1EXZ  the free form of SCF 
    2EC8  the free form of the same protein 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    NAG     N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 3DLigand Explorer Link out to Ligand Expos:NAG Link out to SuperLigands:NAG Link out to SuperHapten:NAG
     
     
  •  
    Move Section Derived Data Hide
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Yuzawa, S.,   Opatowsky, Y.,   Zhang, Z.,   Mandiyan, V.,   Lax, I.,   Schlessinger, J.

    Deposition:   2007-01-27
    Release:   2007-08-07
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 3.50
    R-Value: 0.245 (obs.)
    R-Free: 0.294
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 269.48 α = 90.00 
    b = 52.07 β = 108.00 
    c = 189.79 γ = 90.00