2E9B
Crystal structure of pullulanase type I from Bacillus subtilis str. 168 complexed with maltose
- PDB DOI: https://doi.org/10.2210/pdb2E9B/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2007-01-24 Released: 2008-02-19 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.242 
- R-Value Work: 0.194 
- R-Value Observed: 0.194 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
AmyX protein | 718 | Bacillus subtilis | Mutation(s): 0  Gene Names: amyX EC: 3.2.1.41 | ||
UniProt | |||||
Find proteins for C0SPA0 (Bacillus subtilis (strain 168)) Explore C0SPA0  Go to UniProtKB:  C0SPA0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C0SPA0 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | C | 3 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G96370VA GlyCosmos:  G96370VA GlyGen:  G96370VA |
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | I [auth A], L [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ACT Query on ACT | G [auth A], H [auth A], K [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
CA Query on CA | F [auth A], J [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 2 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900009 Query on PRD_900009 | C | alpha-maltotriose | Oligosaccharide / Nutrient |
Entity ID: 3 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900001 Query on PRD_900001 | D | alpha-maltose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.242 
- R-Value Work: 0.194 
- R-Value Observed: 0.194 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 71.031 | α = 90 |
b = 129.178 | β = 90 |
c = 192.06 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
HKL-2000 | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2008-02-19  Deposition Author(s): Mikami, B., Malle, D., Utsumi, S., Iwamoto, H., Katsuya, Y.
Revision History (Full details and data files)
- Version 1.0: 2008-02-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2023-10-25
Changes: Data collection, Database references, Refinement description, Structure summary