2DXM

Neutron Structure Analysis of Deoxy Human Hemoglobin

Structural Biology Knowledgebase: 2DXM SBKB.org


Experimental Data Snapshot

  • Method: NEUTRON DIFFRACTION

Currently 2DXM does not have a wwPDB validation report.


Literature

Macromolecules
Sequence Display for 2DXM

Classification: OXYGEN STORAGE / TRANSPORT

Total Structure Weight: 64547.69

Macromolecule Entities
Molecule Chains Length Organism Details
Hemoglobin subunit alpha A, C 141 Homo sapiens Gene Name(s): HBA1 Gene View HBA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hemoglobin subunit beta B, D 146 Homo sapiens Gene Name(s): HBB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DOD
Query on DOD

A, B, C, D DEUTERATED WATER
D2 O
XLYOFNOQVPJJNP-ZSJDYOACSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: NEUTRON DIFFRACTION

Structure Validation

Currently 2DXM does not have a validation report.



Entry History

Deposition Data

  • Deposited Date: 2006-08-28
  • Released Date: 2007-12-04
  • Deposition author(s): Morimoto, Y.

Revision History

  • 2013-08-21
    Type: Other | Details: update entity
  • 2013-08-21
    Type: Atom nomenclature | Details: update H atom names of HEM
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update