2DE6

The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase

Structural Biology Knowledgebase: 2DE6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2DE6

Classification: OXIDOREDUCTASE

Total Structure Weight: 173300.36

Macromolecule Entities
Molecule Chains Length Organism Details
terminal oxygenase component of carbazole A, B, C 392 Janthinobacterium EC#: 1.14.12 IUBMB
Gene Name(s): carAa
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ferredoxin component of carbazole D, E, F 115 Pseudomonas resinovorans EC#: 1.14.12 IUBMB
Gene Name(s): carAc
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FES
Query on FES

A, B, C, D, E, F FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A, B, C FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.187
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 98.22 α = 90.00
b = 90.01 β = 104.14
c = 105.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-08
  • Released Date: 2006-12-05
  • Deposition author(s): Ashikawa, Y., Nojiri, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4