2D9Q

Crystal Structure of the Human GCSF-Receptor Signaling Complex

Structural Biology Knowledgebase: 2D9Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.251

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2D9Q

Classification: SIGNALING PROTEIN / CYTOKINE

Total Structure Weight: 53820.10

Macromolecule Entities
Molecule Chains Length Organism Details
CSF3 A 174 Homo sapiens Fragment: residues 1-174
Gene Name(s): CSF3 Gene View C17orf33 GCSF
Granulocyte colony-stimulating factor receptor B 313 Homo sapiens Fragment: Ig-CRH DOMAIN
Mutation: C79S, C164S, C229S
Gene Name(s): CSF3R Gene View GCSFR

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.251
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 134.78 α = 90.00
b = 134.78 β = 90.00
c = 105.47 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-12
  • Released Date: 2006-02-07
  • Deposition author(s): Tamada, T., Kuroki, R.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4