2D81

PHB depolymerase (S39A) complexed with R3HB trimer


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.66 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 2D81

Classification: HYDROLASE

Total Structure Weight: 34021.49

Macromolecule Entities
Molecule Chains Length Organism Details
PHB depolymerase A 318 Talaromyces funiculosus EC#: 3.1.1.75 IUBMB
Gene Name(s): phaZPfu
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RB3
Query on RB3

A (1R)-3-{[(1R)-3-METHOXY-1-METHYL-3-OXOPROPYL]OXY}- 1-METHYL-3-OXOPROPYL (3R)-3-HYDROXYBUTANOATE
METHYL (3R)-3-{[(3R)-3-{[(3R)-3-HYDROXYBUTANOYL]OXY}BUTANOYL]OXY}BUTANOATE (Synonym)
C13 H22 O7
WGAHBMKAEWUQKL-OPRDCNLKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.66 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.176
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 81.93 α = 90.00
b = 48.86 β = 94.45
c = 64.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-30
  • Released Date: 2006-01-31
  • Deposition author(s): Hisano, T., Kasuya, K., Saito, T., Iwata, T., Miki, K.

Revision History

  • Version 1_0: 2006-01-31

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance