2CPT

Solution structure of MIT domain from human SKD1

• PDB DOI: https://doi.org/10.2210/pdb2CPT/pdb

• Classification: PROTEIN TRANSPORT
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2005-05-19 Released: 2005-11-19 
• Deposition Author(s): Suetake, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violation, target function 

Literature

Solution structure of MIT domain from human SKD1

Suetake, T., Hayashi, F., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 12.67 kDa 
• Atom Count: 888 
• Modelled Residue Count: 117 
• Deposited Residue Count: 117 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Vacuolar sorting protein 4b	A	117	Homo sapiens	Mutation(s): 0  Gene Names: VPS4B, SKD1, VPS42
UniProt & NIH Common Fund Data Resources
Find proteins for O75351 (Homo sapiens) Explore O75351  Go to UniProtKB:  O75351
PHAROS:  O75351 GTEx:  ENSG00000119541

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violation, target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-11-19 
Deposition Author(s): Suetake, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-11-19
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations