2CBN

Crystal structure of ZipD from Escherichia coli

Structural Biology Knowledgebase: 2CBN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.230

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2CBN

Classification: HYDROLASE

Total Structure Weight: 33096.53

Macromolecule Entities
Molecule Chains Length Organism Details
RIBONUCLEASE Z A 306 Escherichia coli EC#: 3.1.26.11 IUBMB
Mutation: E2N
Gene Name(s): rbn elaC rnz b2268 JW2263
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.230
  • Space Group: P 64 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 147.20 α = 90.00
b = 147.20 β = 90.00
c = 138.20 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-06
  • Released Date: 2006-02-15
  • Deposition author(s): Pohl, E., Meyer-Klaucke, W., Kostelecky, B.

Revision History

  • 2014-02-05
    Type: Refinement description | Details: REMARK 3
  • 2014-02-05
    Type: Version format compliance | Details: REMARK 4
  • 2014-02-05
    Type: Biological assembly | Details: REMARK 300,REMARK 350