2C4N

NAGD FROM E.COLI K-12 STRAIN

Structural Biology Knowledgebase: 2C4N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 2C4N

Classification: HYDROLASE

Total Structure Weight: 27403.46

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN NAGD A 250 Escherichia coli Gene Name(s): nagD b0675 JW0661
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.198
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.91 α = 90.00
b = 94.80 β = 90.00
c = 119.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-10-20
  • Released Date: 2006-01-26
  • Deposition author(s): Tremblay, L.W., Dunaway-Mariano, D., Allen, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4