2BYB

HUMAN MONOAMINE OXIDASE B IN COMPLEX WITH DEPRENYL

Structural Biology Knowledgebase: 2BYB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.237

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BYB

Classification: OXIDOREDUCTASE

Total Structure Weight: 119626.39

Macromolecule Entities
Molecule Chains Length Organism Details
AMINE OXIDASE [FLAVIN-CONTAINING] B A, B 520 Homo sapiens EC#: 1.4.3.4 IUBMB
Gene Name(s): MAOB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Oxidases

Protein Name: Monoamine Oxidase B


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DPK
Query on DPK

A, B DEPRENYL
N-METHYL-N-[(1R)-1-METHYL-2-PHENYLETHYL]PROP- 2-EN-1-AMINE (Synonym)
C13 H19 N
BVYBGDRWIWQPOV-GFCCVEGCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.237
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 132.84 α = 90.00
b = 225.84 β = 90.00
c = 85.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-07-29
  • Released Date: 2005-08-09
  • Deposition author(s): Binda, C., De Colibus, L., Edmondson, D.E., Mattevi, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor