2BV0

CRYSTAL STRUCTURE OF PROTOCATECHUATE 3,4-DIOXYGENASE FROM ACINETOBACTER SP. ADP1 MUTANT R133H IN COMPLEX WITH PROTOCATECHUATE.

Structural Biology Knowledgebase: 2BV0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BV0

Classification: OXIDOREDUCTASE

Total Structure Weight: 51282.47

Macromolecule Entities
Molecule Chains Length Organism Details
PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN A 209 Acinetobacter sp. adp1 EC#: 1.13.11.3 IUBMB
Mutation: R133H
Gene Name(s): pcaG ACIAD1712
PROTOCATECHUATE 3,4-DIOXYGENASE BETA CHAIN B 241 Acinetobacter sp. adp1 EC#: 1.13.11.3 IUBMB
Gene Name(s): pcaH ACIAD1711

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DHB
Query on DHB

B 3,4-DIHYDROXYBENZOIC ACID
C7 H6 O4
YQUVCSBJEUQKSH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

B FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.167
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 144.95 α = 90.00
b = 144.95 β = 90.00
c = 144.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-06-20
  • Released Date: 2006-10-26
  • Deposition author(s): Vetting, M.W., Valley, M.P., D'Argenio, D.A., Ornston, L.N., Lipscomb, J.D., Ohlendorf, D.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4