2YYU

Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 2YYU

Classification: LYASE

Total Structure Weight: 54612.27

Macromolecule Entities
Molecule Chains Length Organism Details
Orotidine 5'-phosphate decarboxylase A, B 246 Geobacillus kaustophilus EC#: 4.1.1.23 IUBMB
Gene Name(s): pyrF GK1155
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C5P
Query on C5P

A, B CYTIDINE-5'-MONOPHOSPHATE
C9 H14 N3 O8 P
IERHLVCPSMICTF-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.214
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 51.65 α = 90.00
b = 70.15 β = 106.86
c = 62.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-02
  • Released Date: 2007-11-06
  • Deposition author(s): Kanagawa, M., Baba, S., Nakamura, Y., Bessho, Y., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • 2011-07-13
    Type: Derived calculations, Version format compliance