2Y4N

PaaK1 in complex with phenylacetyl adenylate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 2Y4N

Classification: LIGASE

Total Structure Weight: 98042.38

Macromolecule Entities
Molecule Chains Length Organism Details
PHENYLACETATE-COENZYME A LIGASE A, B 437 Burkholderia cenocepacia EC#: 6.2.1.30 IUBMB
Fragment: RESIDUES 2-432
Gene Name(s): paaK BCAL0404
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DLL
Query on DLL

A, B 5'-O-[HYDROXY(PHENYLACETYL)PHOSPHORYL]ADENOSINE
C18 H20 N5 O8 P
VUKDZGAUWUDQRZ-XKLVTHTNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGE
Query on PGE

B TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PAC
Query on PAC

B 2-PHENYLACETIC ACID
C8 H8 O2
WLJVXDMOQOGPHL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A, B BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.181
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 57.26 α = 91.16
b = 62.39 β = 108.33
c = 76.59 γ = 106.27

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-07
  • Released Date: 2011-03-01
  • Deposition author(s): Law, A., Boulanger, M.J.

Revision History

  • Version 1_0: 2011-03-01

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-07-12

    Type: Derived calculations