2Y3A

CRYSTAL STRUCTURE OF P110BETA IN COMPLEX WITH ICSH2 OF P85BETA AND THE DRUG GDC-0941

Structural Biology Knowledgebase: 2Y3A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Y3A

Classification: TRANSFERASE

Total Structure Weight: 161103.53

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT BETA ISOFORM A 1092 Mus musculus EC#: 2.7.1.153 IUBMB
Mutation: R123L
Gene Name(s): Pik3cb
PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT BETA B 302 Mus musculus Fragment: ICSH2 DOMAIN, RESIDUES 423-722
Gene Name(s): Pik3r2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GD9
Query on GD9

A 2-(1H-indazol-4-yl)-6-{[4-(methylsulfonyl)piperazin- 1-yl]methyl}-4-morpholin-4-yl-thieno[3,2- d]pyrimidine
C23 H27 N7 O3 S2
LHNIIDJUOCFXAP-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GD9 IC50: 17 - 33 nM (95) BindingDB
Kd: 16 nM (95) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.234
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 134.31 α = 90.00
b = 134.31 β = 90.00
c = 428.06 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-20
  • Released Date: 2011-03-16
  • Deposition author(s): Zhang, X., Vadas, O., Perisic, O., Williams, R.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4