2XT1

Crystal structure of the HIV-1 capsid protein C-terminal domain (146- 231) in complex with a camelid VHH.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.32 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.161

Literature

Macromolecules
Sequence Display for 2XT1

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 22928.92

Macromolecule Entities
Molecule Chains Length Organism Details
GAG POLYPROTEIN A 86 Human immunodeficiency virus 1 Fragment: C-TERMINAL DOMAIN, RESIDUES 146-231
Mutation: A208G
Gene Name(s): gag
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CAMELID VHH 9 B 121 Vicugna pacos

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.32 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.161
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 60.06 α = 90.00
b = 88.17 β = 90.00
c = 35.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-03
  • Released Date: 2011-10-12
  • Deposition author(s): Igonet, S., Vaney, M.-C., Bartonova, V., Helma, J., Rothbauer, U., Leonhardt, H., Stura, E., Krausslich, H.-G., Rey, F.A.

Revision History

  • Version 1_0: 2011-10-12

    Type: Initial release