2XMS

Crystal structure of human NDRG2 protein provides insight into its role as a tumor suppressor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 2XMS

Classification: SIGNALING PROTEIN

Total Structure Weight: 31579.15

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN NDRG2 A 281 Homo sapiens Fragment: ALPHA-BETA HYDROLASE DOMAIN, RESIDUES 24-304
Mutation: K45Y, K47Y
Gene Name(s): NDRG2 Gene View KIAA1248 SYLD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IMD
Query on IMD

A IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.173
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 93.10 α = 90.00
b = 93.10 β = 90.00
c = 90.21 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-29
  • Released Date: 2011-01-19
  • Deposition author(s): Hwang, J., Kim, Y., Lee, H., Kim, M.H.

Revision History

  • Version 1_0: 2011-01-19

    Type: Initial release

  • Version 1_1: 2011-08-31

    Type: Database references, Version format compliance