2XMR

Crystal structure of human NDRG2 protein provides insight into its role as a tumor suppressor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 2XMR

Classification: SIGNALING PROTEIN

Total Structure Weight: 94157.51

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN NDRG2 A, B, C 281 Homo sapiens Fragment: ALPHA-BETA HYDROLASE DOMAIN, RESIDUES 24-304
Mutation: K45A, K47A
Gene Name(s): NDRG2 Gene View KIAA1248 SYLD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, B, C ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.180
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 86.23 α = 90.00
b = 88.05 β = 90.00
c = 126.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-29
  • Released Date: 2011-01-19
  • Deposition author(s): Hwang, J., Kim, Y., Lee, H., Kim, M.H.

Revision History

  • 2011-08-31
    Type: Database references, Version format compliance